Work
Projects, grouped by domain.
Every project here is an R&D demonstration on public datasets, not client-confidential work. Open one for the method, the data source, and every metric’s caveats.
Genomics & NGS
R&D demonstration, public data · Apr 2026
Cloud-Native Variant Calling Pipeline
Rebuilding a whole-exome variant calling workflow as a containerized Nextflow pipeline, benchmarked on public 1000 Genomes data.
−42%
Runtime and compute cost vs. legacy pipeline
TODO-VERIFY — the 'legacy pipeline' baseline this is measured against isn't documented or published, and there's no linked benchmark script or repo yet (CLAUDE.md §9/§10).
R&D demonstration, public data · Apr 2026
CRISPR Screen Hit Analysis for Target ID
Identifying high-confidence gene targets from a genome-wide CRISPR knockout screen using MAGeCK hit calling on public DepMap data.
18
High-confidence hits shortlisted from 19,000+ genes
TODO-VERIFY — the significance threshold and QC filters behind this shortlist aren't published alongside it yet, and it isn't linked to a notebook or repo (CLAUDE.md §9/§10).